Genomics|Update|Infectious Diseases ► Detection/ Diagnosis

Genomics|Update|Infectious Diseases

Volume 35  Number 10  September 3-17, 2015

Detection/ Diagnosis

Deep sequencing of HIV-1 in cerebrospinal fluid.
Tong Cheuk YW et al. Clin. Infect. Dis. 2015 May 28.

Re-analysis of metagenomic sequences from acute flaccid myelitis patients reveals alternatives to enterovirus D68 infection.
Breitwieser FP et al. F1000Res 2015 180

Genotyping of classical swine fever virus using high-resolution melt analysis.
Titov I et al. J. Virol. Methods 2015 Aug 20.

Subtyping of the Legionella pneumophila "Ulm" outbreak strain using the CRISPR-Cas system.
Lück C et al. Int. J. Med. Microbiol. 2015 Aug 7.

Comparison of phenotypic and genotypic approaches to capsule typing neisseria meningitidis using invasive and carriage isolate collections.
Jones CH et al. J. Clin. Microbiol. 2015 Aug 26.

Fast technology analysis (FTA) enables identification of species and genotypes of latent microsporidia infections in healthy native cameroonians.
Ndzi ES et al. J. Eukaryot. Microbiol. 2015 Aug 25.

Diagnosing balamuthia mandrillaris encephalitis with metagenomic deep sequencing.
Wilson MR et al. Ann. Neurol. 2015 Aug 20.

NMR-based metabolomic urinalysis: a rapid screening test for urinary tract infection.
Lam Ching-Wan et al. Clin. Chim. Acta 2014 Sep 25. 217-23

Assessment of a molecular diagnostic platform for integrated isolation and quantification of mRNA in whole blood.
van den Kieboom CH et al. Eur. J. Clin. Microbiol. Infect. Dis. 2015 Aug 23.

Fast, sensitive, and specific diagnosis of infections with Leishmania species by Cytochrome b PCR in formalin-fixed, paraffin-embedded skin biopsies.
Gebhardt M et al. Br. J. Dermatol. 2015 Aug 19.

Mass spectrometry-based PhyloProteomics (MSPP): A novel microbial typing method.
Erich Zautner A et al. Sci Rep 2015 13431

Genetic and resistance phenotypic subtyping of salmonella saintpaul isolates from various food sources and humans: Phylogenetic concordance in combinatory analyses.
Hayford AE et al. Infect. Genet. Evol. 2015 Aug 20.

Comparative evaluation of matrix-assisted laser desorption ionisation-time of flight mass spectrometry and conventional phenotypic-based methods for identification of clinically important yeasts in a UK-based medical microbiology laboratory.
Fatania N et al. J. Clin. Pathol. 2015 Aug 25.

Characterization of the bacterial community naturally present on commercially grown basil leaves: Evaluation of sample preparation prior to culture-independent techniques.
Ceuppens S et al. Int J Environ Res Public Health 2015 (8) 10171-10197

Using amplicon deep sequencing to detect genetic signatures of plasmodium vivax relapse.
Lin JT et al. J. Infect. Dis. 2015 Sep 15. (6) 999-1008

Detection of streptococcus pyogenes using rapid visual molecular assay.
Zhao X et al. FEMS Microbiol. Lett. 2015 Aug 27.

H1N1 viral proteome peptide microarray predicts individuals at risk for H1N1 infection and segregates infection versus Pandemrix(®) vaccination.
Ambati A et al. Immunology 2015 Jul (3) 357-66

Generation of whole genome sequences of new Cryptosporidium hominis and Cryptosporidium parvum isolates directly from stool samples.
Hadfield SJ et al. BMC Genomics 2015 650

Direct identification and discernment of Mycobacterium avium and Mycobacterium intracellulare using a real-time RNA isothermal amplification and detection method.
Cui Z et al. Tuberculosis (Edinb) 2015 Aug 12.

H1N1 viral proteome peptide microarray predicts individuals at risk for H1N1 infection and segregates infection versus Pandemrix(®) vaccination.
Ambati A et al. Immunology 2015 Jul (3) 357-66